Publications

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INTERNATIONAL PUBLICATIONS

  • Yilmaz, I. C., Ipekoglu, E. M., Bulbul, A., Turay, N., Yildirim, M., Evcili, I., Yilmaz, N. S., Guvencli, N., Aydin, Y., Gungor, B., Saraydar, B., Bartan, A. G., Ibibik, B., Bildik, T., Baydemir, İ., Sanli, H. A., Kayaoglu, B., Ceylan, Y., Yildirim, T., … Gursel, M. (2022). Development and preclinical evaluation of virus-like particle vaccine against COVID-19 infection. Allergy: European Journal of Allergy and Clinical Immunology, 77(1), 258–270. https://doi.org/10.1111/all.15091
     
  • Yildiz Pekoz, A., Akbal Dagistan, O., Fael, H., Culha, M., Erturk, A., Basarir, N. S., Sahin, G., Serhatli, M., Cakirca, G., Tekin, S., Sen, L. S., Sevim, M., Mulazimoglu Durmusoglu, L., & Yegen, B. C. (2022). Pulmonary delivery of favipiravir inhalation solution for COVID-19 treatment: in vitro characterization, stability, in vitro cytotoxicity, and antiviral activity using real time cell analysis. Drug Delivery, 29(1), 2846–2854. https://doi.org/10.1080/10717544.2022.2118398
     
  • Taşlı, N. P., Gönen, Z. B., Kırbaş, O. K., Gökdemir, N. S., Bozkurt, B. T., Bayrakcı, B., Sağraç, D., Taşkan, E., Demir, S., Ekimci Gürcan, N., Bayındır Bilgiç, M., Bayrak, Ö. F., Yetişkin, H., Kaplan, B., Pavel, S. T. I., Dinç, G., Serhatlı, M., Çakırca, G., Eken, A., … Cetin, M. (2022). Preclinical Studies on Convalescent Human Immune Plasma-Derived Exosome: Omics and Antiviral Properties to SARS-CoV-2. Frontiers in Immunology, 13(March), 1–15. https://doi.org/10.3389/fimmu.2022.824378
     
  • Sabancı, A. U., Alkan, P. E., Mujde, C., Polat, H. U., Erguzeloglu, C. O., Bisgin, A., Ozakin, C., & Temel, S. G. (2022). Nanobubble Ozone Stored in Hyaluronic Acid Decorated Liposomes: Antibacterial, Anti-SARS-CoV-2 Effect and Biocompatibility Tests. International Journal of Nanomedicine, 17(December 2021), 351–379. https://doi.org/10.2147/IJN.S328090
     
  • Pelvan, E., Serhatlı, M., Karaoğlu, Ö., Karadeniz, B., Pembeci Kodolbaş, C., Aslı Öncü, N., Çakırca, G., Damarlı, E., Başdoğan, G., Mergen Duymaz, G., Emir Akyıldız, İ., Düz, G., Acar, S., Özhan, Y., Sipahi, H., Charehsaz, M., Aydın, A., Yesilada, E., & Alasalvar, C. (2022). Development of propolis and essential oils containing oral/throat spray formulation against SARS-CoV-2 infection. Journal of Functional Foods, 97(June). https://doi.org/10.1016/j.jff.2022.105225
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  • Nunes, P., Yildizhan, Y., Adiguzel, Z., Marques, F., Costa Pessoa, J., Acilan, C., & Correia, I. (2022). Copper(II) and oxidovanadium(IV) complexes of chromone Schiff bases as potential anticancer agents. Journal of Biological Inorganic Chemistry, 27(1), 89–109. https://doi.org/10.1007/s00775-021-01913-4
     
  • Kayabolen, A., Akcan, U., Özturan, D., Ulbegi-Polat, H., Sahin, G. N., Pinarbasi-Degirmenci, N., Bayraktar, C., Soyler, G., Sarayloo, E., Nurtop, E., Ozer, B., Guney-Esken, G., Barlas, T., Yildirim, I. S., Dogan, O., Karahuseyinoglu, S., Lack, N. A., Kaya, M., Albayrak, C., … Bagci-Onder, T. (2022). Protein Scaffold-Based Multimerization of Soluble ACE2 Efficiently Blocks SARS-CoV-2 Infection In Vitro and In Vivo. Advanced Science, 2201294, 1–18. https://doi.org/10.1002/advs.202201294
     
  • El–Beshti, H. S., Yildizhan, Y., Kayi, H., Cetin, Y., Adigüzel, Z., Gungor-Topcu, G., Gercek, Z., & Özalp-Yaman, Ş. (2022). Anticancer investigation of platinum and copper-based complexes containing quinoxaline ligands. Journal of Molecular Structure, 1250. https://doi.org/10.1016/j.molstruc.2021.131928
     
  • Durdagi, S., Avsar, T., Orhan, M. D., Serhatli, M., Balcioglu, B. K., Ozturk, H. U., Kayabolen, A., Cetin, Y., Aydinlik, S., Bagci-Onder, T., Tekin, S., Demirci, H., Guzel, M., Akdemir, A., Calis, S., Oktay, L., Tolu, I., Butun, Y. E., Erdemoglu, E., … Yumak, Y. (2022). The neutralization effect of montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies. Molecular Therapy, 30(2), 963–974. https://doi.org/10.1016/j.ymthe.2021.10.014
     
  • Dogan, K., Erol, E., Didem Orhan, M., Degirmenci, Z., Kan, T., Gungor, A., Yasa, B., Avsar, T., Cetin, Y., Durdagi, S., & Guzel, M. (2022). Instant determination of the artemisinin from various Artemisia annua L. extracts by LC-ESI-MS/MS and their in-silico modelling and in vitro antiviral activity studies against SARS-CoV-2. Phytochemical Analysis, 33(2), 303–319. https://doi.org/10.1002/pca.3088
     
  • Çolak, Ç. Y., & Tefon Öztürk, B. E. (2022).  Bordetella pertussis and outer membrane vesicles. Pathogens and Global Health, 00(00), 1–14. https://doi.org/10.1080/20477724.2022.2117937
     
  • Akkoç, B., Samsunlu, T., Işık, Ş., Özçeşmeci, M., Atmaca, G. Y., Erdoğmuş, A., Serhatlı, M., & Hamuryudan, E. (2022). Pegylated metal-free and zinc(ii) phthalocyanines: synthesis, photophysicochemical properties and in vitro photodynamic activities against head, neck and colon cancer cell lines. Dalton Transactions, 51(26), 10136–10147. https://doi.org/10.1039/d2dt00704e
     
  • Yılmaz Çolak, Ç. (2021). Computational Design of a Multi-epitope Vaccine Against Clostridium chauvoei: An Immunoinformatics Approach. International Journal of Peptide Research and Therapeutics, 27(4), 2639–2649. https://doi.org/10.1007/s10989-021-10279-9
     
  • Yılmaz, Ç., Yılmaz, A. M., Tekdaş, D. A., & Kara, A. (2021). Immunoinformatics approach for the determination of antigenic epitope candidates against Burkholderia cenocepacia. Journal of Genetic Engineering and Biotechnology Research, 3(1), 7–12. https://doi.org/10.33140/jgebr.03.01.02
     
  • Yılmaz, Ç. (2021). Identification of Novel Drug Targets and Antigenic Proteins in Helicobacter hepaticus through Proteome-Mediated Mining. American Journal of Biomedical Science & Research, 13(4), 484–494. https://doi.org/10.34297/ajbsr.2021.13.001900
     
  • Sergi, B., Bulut, I., Xia, Y., Waller, Z. A. E., Yildizhan, Y., Acilan, C., & Lord, R. M. (2021). Understanding the Potential In Vitro Modes of Action of Bis(β-diketonato) Oxovanadium(IV) Complexes. ChemMedChem, 16(15), 2402–2410. https://doi.org/10.1002/cmdc.202100152
     
  • Ribeiro, N., Bulut, I., Cevatemre, B., Teixeira, C., Yildizhan, Y., Andre, V., Adao, P., Pessoa, J. C., Acilan, C., & Correia, I. (2021). Cu(ii) and V(iv)O complexes with tri- or tetradentate ligands based on (2-hydroxybenzyl)-l-alanines reveal promising anticancer therapeutic potential. Dalton Transactions, 50(1), 157–169. https://doi.org/10.1039/d0dt03331f
     
  • Nalbantoglu, S., & Karadag, A. (2021). Metabolomics bridging proteomics along metabolites/oncometabolites and protein modifications: Paving the way toward integrative multiomics. Journal of Pharmaceutical and Biomedical Analysis, 199, 114031. https://doi.org/10.1016/j.jpba.2021.114031
     
  • Kara, A., Özgür, A., Nalbantoğlu, S., & Karadağ, A. (2021). DNA repair pathways and their roles in drug resistance for lung adenocarcinoma. Molecular Biology Reports, 48(4), 3813–3825. https://doi.org/10.1007/s11033-021-06314-z
     
  • Guler Gokce, Z., Birol, S. Z., Mitina, N., Harhay, K., Finiuk, N., Glasunova, V., Stoika, R., Ercelen, S., & Zaichenko, A. (2021). Novel amphiphilic block-copolymer forming stable micelles and interpolyelectrolyte complexes with DNA for efficient gene delivery. International Journal of Polymeric Materials and Polymeric Biomaterials, 70(8), 554–573. https://doi.org/10.1080/00914037.2020.1740988
     
  • Denizci Öncü, M., Balcıoğlu, B. K., Özgür, B., Öztürk, H. Ü., Serhatlı, M., Işık, Ş., Erdağ, B., Dinler Doğanay, G., & Özdemir Bahadır, A. (2021). Structure-based engineering of an antiangiogenic scFv antibody for soluble production in E. coli without loss of activity. Biotechnology and Applied Biochemistry, October, 1–16. https://doi.org/10.1002/bab.2273
     
  • Cetin, Y., Sahin, M. G., & Kok, F. N. (2021). Application potential of three-dimensional silk fibroin scaffold using mesenchymal stem cells for cardiac regeneration. Journal of Biomaterials Applications, 36(4), 740–753. https://doi.org/10.1177/08853282211018529
     
  • Watjanatepin, P., Castagnola, V., Cetin, Y., Linkov, I., Skentelbery, C., & Prodanov, D. (2020). Workshop Report: Governance of Emerging Nanotechnology Risks in the Semiconductor Industry. Frontiers in Public Health, 8(July), 1–8. https://doi.org/10.3389/fpubh.2020.00275
     
  • Kurnaz, I. A. (2020). A Systematic Review of Synthetic Biology - A New Era in Biopharmaceutical Drug Development. Biomedical Journal of Scientific & Technical Research, 29(1). https://doi.org/10.26717/bjstr.2020.29.004753
     
  • Ibrahim, A. M. H., Balog, M., Krizik, P., Novy, F., Cetin, Y., Svec, P., Bajana, O., & Drienovsky, M. (2020). Partially biodegradable Ti-based composites for biomedical applications subjected to intense and cyclic loading. Journal of Alloys and Compounds, 839, 155663. https://doi.org/10.1016/j.jallcom.2020.155663
     
  • Cetin, Y., Ibrahim, A. M. H., Gungor, A., Yildizhan, Y., Balog, M., & Krizik, P. (2020). In-vitro evaluation of a partially biodegradable TiMg dental implant: The cytotoxicity, genotoxicity, and oxidative stress. Materialia, 14(September), 100899. https://doi.org/10.1016/j.mtla.2020.100899
     
  • Matos, C. P., Yildizhan, Y., Adiguzel, Z., Pavan, F. R., Campos, D. L., Pessoa, J. C., Ferreira, L. P., Tomaz, A. I., Correia, I., & Acilan, C. (2019). New ternary iron(iii) aminobisphenolate hydroxyquinoline complexes as potential therapeutic agents. Dalton Transactions, 48(24), 8702–8716. https://doi.org/10.1039/c9dt01193e
     
  • Matos, C. P., Adiguzel, Z., Yildizhan, Y., Cevatemre, B., Onder, T. B., Cevik, O., Nunes, P., Ferreira, L. P., Carvalho, M. D., Campos, D. L., Pavan, F. R., Pessoa, J. C., Garcia, M. H., Tomaz, A. I., Correia, I., & Acilan, C. (2019). May iron(III) complexes containing phenanthroline derivatives as ligands be prospective anticancer agents? European Journal of Medicinal Chemistry, 176, 492–512. https://doi.org/10.1016/j.ejmech.2019.04.070
     
  • Matos, C. P., Adiguzel, Z., Yildizhan, Y., Cevatemre, B., Bagci-Onder, T., Cevik, O., Nunes, P., Ferreira, L. P., Carvalho, M. D., Campos, D. L., Pavan, F. R., Pessoa, J. C., Garcia, M. H., Tomaz, A. I., Correia, I., & Acilan, C. (2019). Experimental data on novel Fe(III)-complexes containing phenanthroline derivatives for their anticancer properties. Data in Brief, 27, 1–31. https://doi.org/10.1016/j.dib.2019.104548
     
  • Koban bastanlar, E., Togan, İ., Kankılıç, T., Acan, S., Hatipoğlu, T., Emir, H., Denizci Öncü, M., & Saatoğlu, F. (2019). Genetic Diversity of Gazelles (Gazella marica and Gazella gazella) in Southeast Turkey: A Special Emphasis on Ongoing Conservation Studies of Gazella marica in Turkey. European Journal of Biology, 78(2), 89–103. https://doi.org/10.26650/eurjbiol.2019.0014
     
  • Cevher-Keskin, B., Yıldızhan, Y., Yüksel, B., Dalyan, E., & Memon, A. R. (2019). Characterization of differentially expressed genes to Cu stress in Brassica nigra by Arabidopsis genome arrays. Environmental Science and Pollution Research, 26(1), 299–311. https://doi.org/10.1007/s11356-018-3577-7
     
  • Cevher-Keskin, B., Selçukcan-Erol, Ç., Yüksel, B., Ertekin, Ö., Yıldızhan, Y., Onarıcı, S., Kulen, O., & Memon, A. R. (2018). Comparative transcriptome analysis of Zea mays in response to petroleum hydrocarbon stress. Environmental Science and Pollution Research, 25(32), 32660–32674. https://doi.org/10.1007/s11356-018-3078-8
     
  • Acioglu, C., Tuzuner, M. B., Serhatli, M., Acilan, C., Sahin, B., Akgun, E., Adiguzel, Z., Gurel, B., & Baykal, A. T. (2018). A Proteomic Analysis of Mitochondrial Complex III Inhibition in SH-SY5Y Human Neuroblastoma Cell Line. Current Proteomics, 16(2), 136–147. https://doi.org/10.2174/1570164615666180713110139
     
  • Guler Gokce, Z., Zuhal Birol, S., Eren, T., & Ercelen Ceylan, S. (2017). Biophysical characterization of quaternary pyridinium functionalized polynorbornenes for DNA complexation and their cellular interactions. Biopolymers, 107(4), 1–13. https://doi.org/10.1002/bip.23005
     
  • Erdag, B., Balcioglu, K. B., Bahadir, A. O., Hinc, D., Ibrahimoglu, O., Bahar, A., Basalp, A., & Yucel, F. (2017). Cloning of anti-HBsAg single-chain variable fragments from hybridoma cells for one-step ELISA. Biotechnology and Biotechnological Equipment, 31(5), 964–973. https://doi.org/10.1080/13102818.2017.1348256
     
  • Dalyan, E., Yüzbaşıoğlu, E., Keskin, B. C., Yıldızhan, Y., Memon, A., Ünal, M., & Yüksel, B. (2017). The identification of genes associated with Pb and Cd response mechanism in Brassica juncea L. by using Arabidopsis expression array. Environmental and Experimental Botany, 139(May), 105–115. https://doi.org/10.1016/j.envexpbot.2017.05.001
     
  • Cetin, Y., Adiguzel, Z., Polat, H. U., Akkoc, T., Tas, A., Cevatemre, B., Celik, G., Carikci, B., Yilmaz, V. T., Ulukaya, E., & Acilan, C. (2017). A palladium(II)-saccharinate complex of terpyridine exerts higher anticancer potency and less toxicity than cisplatin in a mouse allograft model. Anti-Cancer Drugs, 28(8), 898–910. https://doi.org/10.1097/CAD.0000000000000531

 

NATIONAL PUBLICATIONS

  • Özdemir Bahadir, A., Balcioğlu, B. K., Serhatli, M., Işik, Ş., & Erdağ, B. (2021). Identifying specific matrix metalloproteinase-2-inhibiting peptides through phage display-based subtractive screening. Turkish Journal of Biology, 45(6), 674–682. https://doi.org/10.3906/biy-2105-6.
     
  • Çetin, Y. (2021). Application of the Validated In Vitro Reconstructed Human Skin and Eye Models For Hazard Identification of the Chemical Mixtures. Gümüşhane Üniversitesi Sağlık Bilimleri Dergisi, 10(2), 186–193. https://doi.org/10.37989/gumussagbil.818473.
     
  • Balcioğlu, B. K., Denizci Öncü, M., Öztürk, H. Ü., Yücel, F., Kaya, F., Serhatli, M., Ülbeği Polat, H., Tekin, Ş., & Özdemir Bahadir, A. (2020). SARS-CoV-2 neutralizing antibody development strategies. Turkish Journal of Biology, 44(Special issue 1), 203–214. https://doi.org/10.3906/biy-2005-91.
     
  • Başalp, A., Hatipoğlu, İ., Balcıoğlu, B. K., Söğüt, İ., Özdemir Bahadir, A., Uzyol, K. S., Sivas, H., & Erdağ, B. (2017). Filamentöz faj üzerinde eksperese edilen Hepatit B yüzey antijenine karşı antikor yanıtı. Mehmet Akif Ersoy Üniversitesi Sağlık Bilimleri Enstitüsü Dergisi, 5(2), 124–134. https://doi.org/10.24998/maeusabed.322704.